sascha/workload-automation
1
0
Fork 0
mirror of https://github.com/ARM-software/workload-automation.git synced 2025-11-04 00:52:08 +00:00
Code Issues Releases Wiki Activity

Merge pull request #11 from JaviMerino/ipynb_exp_improvs

Browse Source 
Generic Ipynb_exporter improvements to ease ipython 3 support
This commit is contained in:
setrofim
2015-04-17 18:23:04 +01:00
parent 314fecfcd4 3bf04735c1
commit 0faa5ae455
2 changed files with 137 additions and 93 deletions
Download Patch File Download Diff File Expand all files Collapse all files

101
wlauto/result_processors/ipynb_exporter/__init__.py
View File

@@ -18,20 +18,13 @@
from datetime import datetime
import os
import shutil
import subprocess
import webbrowser
from wlauto import File, Parameter, ResultProcessor
from wlauto.exceptions import ConfigError, ResultProcessorError
import wlauto.utils.ipython as ipython
from wlauto.utils.misc import open_file
try:
import IPython.kernel as ipython_kernel
import IPython.nbformat.current as ipython_nbformat
except ImportError:
ipython_kernel = None
ipython_nbformat = None
try:
import jinja2
except ImportError:
@@ -105,9 +98,8 @@ class IPythonNotebookExporter(ResultProcessor):
self.nbbasename = datetime.now().strftime(nbbasename_template)
def validate(self):
if not ipython_kernel:
msg = '{} requires ipython package to be installed'.format(self.name)
raise ResultProcessorError(msg)
if ipython.import_error_str:
raise ResultProcessorError(ipython.import_error_str)
if not jinja2:
msg = '{} requires python-jinja2 package to be installed'.format(self.name)
@@ -129,7 +121,8 @@ class IPythonNotebookExporter(ResultProcessor):
self.open_notebook()
if self.convert_to_pdf:
self.generate_pdf(context.run_output_directory)
ipython.generate_pdf(self.nbbasename,
context.run_output_directory)
if self.show_pdf:
self.open_pdf()
@@ -139,101 +132,23 @@ class IPythonNotebookExporter(ResultProcessor):
template = jinja2.Template(fin.read())
notebook_in = template.render(result=result, context=context)
notebook = ipython_nbformat.reads(notebook_in, 'json')
notebook = ipython.read_notebook(notebook_in)
self.run_notebook(notebook)
ipython.run_notebook(notebook)
self.notebook_file = os.path.join(context.run_output_directory,
self.nbbasename)
with open(self.notebook_file, 'w') as wfh:
ipython_nbformat.write(notebook, wfh, 'json')
ipython.write_notebook(notebook, wfh)
if self.notebook_directory:
shutil.copy(self.notebook_file,
os.path.join(self.notebook_directory))
def run_notebook(self, notebook):
"""Run the notebook"""
kernel_manager = ipython_kernel.KernelManager()
kernel_manager.start_kernel(stderr=open(os.devnull, 'w'))
kernel_client = kernel_manager.client()
kernel_client.start_channels()
for sheet in notebook.worksheets:
for (prompt_number, cell) in enumerate(sheet.cells, 1):
if cell.cell_type != "code":
continue
cell.outputs = self.run_cell(kernel_client, cell)
cell.prompt_number = prompt_number
if cell.outputs:
cell.outputs[0]["prompt_number"] = prompt_number
kernel_manager.shutdown_kernel()
def run_cell(self, kernel_client, cell): # pylint: disable=R0201
"""Run a cell of a notebook in an ipython kernel and return its output"""
kernel_client.shell_channel.execute(cell.input)
outs = []
while True:
msg = kernel_client.get_iopub_msg()
msg_type = msg["msg_type"]
content = msg["content"]
out = ipython_nbformat.NotebookNode(output_type=msg_type)
if msg_type == "status":
if content["execution_state"] == "idle":
break
else:
continue
elif msg_type == "pyin":
continue
elif msg_type == "stream":
out.stream = content["name"]
out.text = content["data"]
elif msg_type in ("display_data", "pyout"):
for mime, data in content["data"].iteritems():
if mime == "text/plain":
attr = "text"
else:
attr = mime.split("/")[-1]
setattr(out, attr, data)
elif msg_type == "pyerr":
out.ename = content["ename"]
out.evalue = content["evalue"]
out.traceback = content["traceback"]
else:
raise ValueError("Unknown msg_type {}".format(msg_type))
outs.append(out)
return outs
def open_notebook(self):
"""Open the notebook in a browser"""
webbrowser.open(self.notebook_url.rstrip('/') + '/' + self.nbbasename)
def generate_pdf(self, output_directory):
"""Generate a PDF from the ipython notebook"""
# ipython nbconvert generates the pdf and other temporary files in the
# current directory. Move to the results directory to avoid polluting a
# random directory
prev_dir = os.getcwd()
os.chdir(output_directory)
ipython_nbconvert = ['ipython', 'nbconvert', '--to=latex', '--post=PDF',
self.nbbasename]
with open(os.devnull, 'w') as devnull:
subprocess.check_call(ipython_nbconvert, stderr=devnull)
os.chdir(prev_dir)
def open_pdf(self):
"""Open the PDF"""
pdf_file = os.path.splitext(self.notebook_file)[0] + ".pdf"

129
wlauto/utils/ipython.py Normal file
View File

@@ -0,0 +1,129 @@
# Copyright 2015 ARM Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import os
import subprocess
import_error_str = ''
try:
import IPython
except ImportError as import_error:
IPython = None
# Importing IPython can fail for a variety of reasons, report the actual
# failure unless it's just that the package is not present
if import_error.message.startswith("No module named"): # pylint: disable=E1101
import_error_str = 'ipynb_exporter requires ipython package to be installed'
else:
import_error_str = import_error.message
if IPython and (IPython.version_info[0] == 2):
import IPython.kernel
import IPython.nbformat.v3
def read_notebook(notebook_in):
return IPython.nbformat.v3.reads_json(notebook_in)
def write_notebook(notebook, fout):
IPython.nbformat.v3.nbjson.JSONWriter().write(notebook, fout)
NotebookNode = IPython.nbformat.v3.NotebookNode
IPYTHON_NBCONVERT = ['ipython', 'nbconvert', '--to=latex', '--post=PDF']
elif IPython:
# Unsupported IPython version
IPython_ver_str = ".".join([str(n) for n in IPython.version_info])
import_error_str = 'Unsupported IPython version {}'.format(IPython_ver_str)
def run_cell(kernel_client, cell):
"""Run a cell of a notebook in an ipython kernel and return its output"""
kernel_client.execute(cell.input)
outs = []
while True:
msg = kernel_client.get_iopub_msg()
msg_type = msg["msg_type"]
content = msg["content"]
out = NotebookNode(output_type=msg_type)
if msg_type == "status":
if content["execution_state"] == "idle":
break
else:
continue
elif msg_type == "pyin":
continue
elif msg_type == "stream":
out.stream = content["name"]
out.text = content["data"]
elif msg_type in ("display_data", "pyout"):
for mime, data in content["data"].iteritems():
if mime == "text/plain":
attr = "text"
else:
attr = mime.split("/")[-1]
setattr(out, attr, data)
elif msg_type == "pyerr":
out.ename = content["ename"]
out.evalue = content["evalue"]
out.traceback = content["traceback"]
else:
raise ValueError("Unknown msg_type {}".format(msg_type))
outs.append(out)
return outs
def run_notebook(notebook):
"""Run the notebook"""
kernel_manager = IPython.kernel.KernelManager()
kernel_manager.start_kernel(stderr=open(os.devnull, 'w'))
kernel_client = kernel_manager.client()
kernel_client.start_channels()
for sheet in notebook.worksheets:
for (prompt_number, cell) in enumerate(sheet.cells, 1):
if cell.cell_type != "code":
continue
cell.outputs = run_cell(kernel_client, cell)
cell.prompt_number = prompt_number
if cell.outputs:
cell.outputs[0]["prompt_number"] = prompt_number
kernel_manager.shutdown_kernel()
def generate_pdf(nbbasename, output_directory):
"""Generate a PDF from the ipython notebook
ipython nbconvert claims that the CLI is not stable, so keep this
function here to be able to cope with inconsistencies
"""
prev_dir = os.getcwd()
os.chdir(output_directory)
with open(os.devnull, 'w') as devnull:
subprocess.check_call(IPYTHON_NBCONVERT + [nbbasename], stderr=devnull)
os.chdir(prev_dir)